{
  "neurodata.io": {
    "/": {
      "date": "2026-02-06T18:39:03Z",
      "httpProtocol": "h2, tls/1.3",
      "httpStatus": 200,
      "ipAddress": "18.208.88.157",
      "ipASN": "Amazon.com, Inc.",
      "ipCountry": "United States",
      "httpHeaderHash": "MCFABS7NH4KYMOVDYL4M7ZED355H3IUS",
      "httpHeaderTechnologies": [
        "HSTS",
        "Netlify"
      ],
      "httpHeaderUrls": [],
      "httpHeaderByteSize": 487,
      "httpBodyHash": "EM6YTGRAX3RXDUT3ARZW47A4UU3PJVZD",
      "httpBodyTechnologies": [
        "cdnjs",
        "jQuery",
        "Pygments",
        "RequireJS",
        "Cloudflare",
        "Underscore.js"
      ],
      "httpBodyUrls": [
        "/genindex",
        "#free-software",
        "/demo/demo#Use-reoriented-target-\u0026-target_resolution",
        "/license",
        "https://readthedocs.org",
        "_static/language_data.js",
        "/demo/demo#Preprocess-raw-image",
        "https://github.com/rtfd/sphinx_rtd_theme",
        "/reference/preprocessing#module-ardent.preprocessing.normalization",
        "http://www.github.com/neurodata/ardent/",
        "/reference/presets#module-ardent.presets.registration_parameters",
        "https://www.netlify.com",
        "/demo/demo#Downsample-data",
        "/search",
        "/py-modindex",
        "_static/pygments.css",
        "#ardent-image-registration-abstracted",
        "/install#install-the-released-version",
        "/demo/demo#Visualize-data-orientation-as-loaded.",
        "/reference/io",
        "/install#testing",
        "/demo/demo#Apply-registration",
        "/demo/demo#Reorient-target-and-revisualize",
        "/tutorial",
        "/reference/transform",
        "/reference/preprocessing",
        "/demo/demo",
        "install.html",
        "/reference/visualization",
        "#indices-and-tables",
        "https://docs.python.org/3/",
        "/install#hardware-requirements",
        "https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js",
        "#python",
        "search.html",
        "/reference/",
        "/demo/demo#Visualize-results",
        "https://github.com/neurodata/ardent",
        "/reference/preprocessing#module-ardent.preprocessing.resampling",
        "https://www.netlify.com/img/global/badges/netlify-color-accent.svg",
        "genindex.html",
        "/reference/presets",
        "_static/css/theme.css",
        "_sources/index.rst.txt",
        "https://pypi.org/project/ardent/",
        "#",
        "/install",
        "_static/doctools.js",
        "_static/js/theme.js",
        "/demo/demo#Orient-data",
        "/demo/demo#Parameter-tune",
        "/install#python-package-dependencies",
        "/reference/presets#module-ardent.presets.batch_preprocessing",
        "_static/jquery.js",
        "/demo/demo#Preprocess-downsampled-image",
        "#documentation",
        "/demo/demo#Load-data",
        "http://sphinx-doc.org/",
        "_static/documentation_options.js",
        "#motivation",
        "_static/underscore.js",
        "/demo/demo#Perform-registration",
        "/reference/preprocessing#preprocessing-pipeline"
      ],
      "httpBodyMetaTags": {},
      "httpBodyByteSize": 13584,
      "httpBodyPageTitle": "ARDENT: Image Registration Abstracted — ARDENT 1.0.3 documentation"
    },
    "/api/generated/hyppo.independence.cca": {
      "date": "2026-02-08T02:52:48Z",
      "httpProtocol": "h2, tls/1.3",
      "httpStatus": 200,
      "ipAddress": "98.84.224.111",
      "ipASN": "Amazon.com, Inc.",
      "ipCountry": "United States",
      "httpHeaderHash": "7BIBPRVCHY4L34UYWEP5QONDHHMOHU3B",
      "httpHeaderTechnologies": [
        "HSTS",
        "Netlify"
      ],
      "httpHeaderUrls": [],
      "httpHeaderByteSize": 487,
      "httpBodyHash": "RT4LFNVM4ZCAJTFBCRCNBBZIPRSWXKDT",
      "httpBodyTechnologies": [
        "Sphinx:3.3.0",
        "Underscore.js",
        "cdnjs",
        "jQuery",
        "Pygments",
        "RequireJS",
        "Cloudflare"
      ],
      "httpBodyUrls": [
        "/api/generated/hyppo.ksample.energy",
        "/api/generated/hyppo.independence.hsic",
        "/api/generated/hyppo.ksample.mean_embedding.mean_embed_distance",
        "#hyppo.independence.CCA.statistic",
        "/api/generated/hyppo.conditional.fcit",
        "https://doi.org/10.1007/978-1-4612-4380-9_14",
        "../../_images/sphx_glr_independence_thumb.png",
        "/api/generated/hyppo.conditional.kci",
        "/api/generated/hyppo.tools.linear",
        "https://github.com/neurodata/hyppo",
        "../../_static/gallery-dataframe.css",
        "../../_static/css/theme.css",
        "#cca",
        "/development/",
        "/api/generated/hyppo.tools.perm_test",
        "../../_static/jquery.js",
        "/api/generated/hyppo.independence.hhg",
        "/api/generated/hyppo.tools.sin_four_pi",
        "/api/generated/hyppo.tools.compute_kern",
        "/api/generated/hyppo.tools.indep_normal",
        "/api/generated/hyppo.tools.multi_perm_test",
        "/api/generated/hyppo.tools.correlated_lognormal",
        "/api/generated/hyppo.tools.cond_indep_normal",
        "#hyppo.independence.CCA",
        "/api/generated/hyppo.tools.ts_sim",
        "/api/generated/hyppo.tools.w_shaped",
        "/api/generated/hyppo.ksample.k_sample_transform",
        "/api/generated/hyppo.tools.correlated_normal_nonliear",
        "hyppo.independence.HHG.html",
        "/get_start/",
        "/api/generated/hyppo.tools.fourth_root",
        "/api/generated/hyppo.ksample.smoothcftest",
        "/api/generated/hyppo.tools.perm_test#hyppo.tools.perm_test",
        "../../_static/css/blank.css",
        "/api/generated/hyppo.tools.rot_ksamp",
        "/api/generated/hyppo.tools.chi2_approx",
        "/api/generated/hyppo.tools.compute_dist",
        "../../_static/pygments.css",
        "/api/generated/hyppo.ksample.manova",
        "/api/generated/hyppo.discrim.discrimtwosample",
        "/api/generated/hyppo.d_variate.base.dvariatetest",
        "/api/generated/hyppo.ksample.smoothcf.smooth_cf_distance",
        "https://127.0.0.1:8000/api/generated/hyppo.independence.CCA.html",
        "../../_static/doctools.js",
        "../../_static/css/custom.css",
        "/api/generated/hyppo.tools.indep_ar",
        "../../_static/language_data.js",
        "/api/generated/hyppo.d_variate.dhsic",
        "/api/generated/hyppo.discrim.discrimonesample",
        "../../_static/vendor/fontawesome/5.13.0/css/all.min.css",
        "http://sphinx-doc.org/",
        "/api/generated/hyppo.tools.indep_binomial",
        "/api/generated/hyppo.tools.correlated_binomial",
        "/api/generated/hyppo.tools.cubic",
        "/api/generated/hyppo.tools.two_parabolas",
        "/api/generated/hyppo.tools.condi_indep_sim",
        "/api/generated/hyppo.conditional.partialdcorr",
        "../../_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.woff2",
        "https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js",
        "/api/generated/hyppo.tools.logarithmic",
        "/api/generated/hyppo.tools.sin_sixteen_pi",
        "https://doi.org/10.1037/0033-2909.85.2.410",
        "#id4",
        "/api/generated/hyppo.tools.spiral",
        "/api/generated/hyppo.ksample.hotelling",
        "/api/generated/hyppo.tools.correlated_normal",
        "/api/generated/hyppo.discrim.base.discriminabilitytest",
        "https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray",
        "#id1",
        "/api/generated/hyppo.independence.base.independencetest",
        "#id6",
        "/api/",
        "/api/generated/hyppo.tools.quadratic",
        "/api/generated/hyppo.independence.mgc",
        "/api/generated/hyppo.independence.kmerf",
        "/api/generated/hyppo.conditional.partialcorr",
        "/api/generated/hyppo.tools.ellipse",
        "#footcite-hardooncanonicalcorrelationanalysis2004",
        "../../_static/css/index.ff1ffe594081f20da1ef19478df9384b.css",
        "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=TeX-AMS-MML_HTMLorMML",
        "../../search.html",
        "../../_static/js/copybutton.js",
        "/api/generated/hyppo.ksample.base.ksampletest",
        "/api/generated/hyppo.tools.multi_compute_kern",
        "/api/generated/hyppo.tools.correlated_t_linear",
        "/user_guide/independence#sphx-glr-tutorials-independence-py",
        "#",
        "#id2",
        "../../genindex.html",
        "../../_static/gallery-rendered-html.css",
        "/api/generated/hyppo.time_series.ljungbox",
        "#footcite-hardlecanonicalcorrelationanalysis2015",
        "/api/generated/hyppo.tools.power",
        "/api/generated/hyppo.tools.joint_normal",
        "/api/generated/hyppo.independence.maxmargin",
        "/api/generated/hyppo.ksample.ksamplehhg",
        "/api/generated/hyppo.time_series.dcorrx",
        "#footcite-knappcanonicalcorrelationanalysis1978",
        "#id3",
        "/user_guide/",
        "../../_static/gallery.css",
        "/api/generated/hyppo.ksample.friedmanrafsky",
        "/api/generated/hyppo.tools.correlated_t_nonlinear",
        "/api/generated/hyppo.tools.correlated_t_quadratic",
        "../../_static/underscore.js",
        "/api/generated/hyppo.kgof.fssd",
        "/api/generated/hyppo.independence.rv",
        "https://doi.org/10.1162/0899766042321814",
        "/api/generated/hyppo.tools.indep_lognormal",
        "/api/generated/hyppo.tools.multiplicative_noise",
        "/changelog/",
        "/api/generated/hyppo.tools.diamond",
        "#examples-using-hyppo-independence-cca",
        "../../_static/documentation_options.js",
        "/api/generated/hyppo.independence.dcorr",
        "/api/generated/hyppo.tools.nonlinear_process",
        "../../_static/js/index.be7d3bbb2ef33a8344ce.js",
        "/api/generated/hyppo.tools.cond_indep_normal_nonlinear",
        "#hyppo.independence.CCA.test",
        "https://arxiv.org/abs/1907.02088",
        "/api/generated/hyppo.tools.indep_sim",
        "/api/generated/hyppo.tools.gaussian_3samp",
        "https://github.com/neurodata/hyppo/edit/main/docs/api/generated/hyppo.independence.CCA.rst",
        "/api/generated/hyppo.independence.sim_matrix",
        "/api/generated/hyppo.tools.step",
        "/api/generated/hyppo.ksample.mmd",
        "/api/generated/hyppo.ksample.disco",
        "hyppo.independence.RV.html",
        "/",
        "/api/generated/hyppo.ksample.ksample",
        "https://neurodata.io/",
        "../../_static/gallery-binder.css",
        "/api/generated/hyppo.kgof.base.goftest",
        "/api/generated/hyppo.tools.exponential",
        "/api/generated/hyppo.tools.cross_corr_ar",
        "https://doi.org/10.1007/978-3-662-45171-7_16",
        "/api/generated/hyppo.tools.cond_indep_binomial",
        "/api/generated/hyppo.tools.uncorrelated_bernoulli",
        "/api/generated/hyppo.ksample.meanembeddingtest",
        "/api/generated/hyppo.tools.cond_indep_lognormal",
        "https://docs.python.org/3/library/functions.html#float",
        "/api/generated/hyppo.tools.circle",
        "../../_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.woff2",
        "/api/generated/hyppo.time_series.mgcx",
        "#footcite-hotellingrelationstwosets1992",
        "/api/generated/hyppo.conditional.conditionaldcorr",
        "/api/generated/hyppo.time_series.base.timeseriestest",
        "https://docs.python.org/3/library/functions.html#int",
        "/api/generated/hyppo.tools.square",
        "/api/generated/hyppo.tools.multimodal_independence"
      ],
      "httpBodyMetaTags": {},
      "httpBodyByteSize": 35357,
      "httpBodyPageTitle": "CCA — hyppo alpha documentation"
    },
    "/changelog/v0.2.1": {
      "date": "2026-02-08T01:22:41Z",
      "httpProtocol": "h2, tls/1.3",
      "httpStatus": 200,
      "ipAddress": "98.84.224.111",
      "ipASN": "Amazon.com, Inc.",
      "ipCountry": "United States",
      "httpHeaderHash": "6TUNMOKJJ4FDMPUGIJRRHZXDBVXZJ7G5",
      "httpHeaderTechnologies": [
        "HSTS",
        "Netlify"
      ],
      "httpHeaderUrls": [],
      "httpHeaderByteSize": 487,
      "httpBodyHash": "LSDAQR777PDDIILLX53KAOVDESNFKL5D",
      "httpBodyTechnologies": [
        "Pygments",
        "RequireJS",
        "Cloudflare",
        "Sphinx:3.3.0",
        "Underscore.js",
        "cdnjs",
        "jQuery"
      ],
      "httpBodyUrls": [
        "/changelog/v0.1.1",
        "https://neurodata.io/",
        "../_static/documentation_options.js",
        "../_static/gallery-rendered-html.css",
        "#authors",
        "/development/",
        "/changelog/v0.1.2",
        "/changelog/v0.2.0",
        "/changelog/v0.5.0",
        "../_static/css/theme.css",
        "../_static/css/custom.css",
        "../_static/gallery-binder.css",
        "/changelog/v0.3.0",
        "/changelog/v0.5.1",
        "../_static/gallery.css",
        "http://sphinx-doc.org/",
        "https://127.0.0.1:8000/changelog/v0.2.1.html",
        "../_static/css/index.ff1ffe594081f20da1ef19478df9384b.css",
        "../_static/vendor/fontawesome/5.13.0/webfonts/fa-brands-400.woff2",
        "/changelog/v0.3.1",
        "/changelog/v0.4.0",
        "/changelog/v0.5.2",
        "../_static/doctools.js",
        "../_static/pygments.css",
        "https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js",
        "/changelog/",
        "/get_start/",
        "v0.2.2.html",
        "/user_guide/",
        "../_static/jquery.js",
        "../_static/gallery-dataframe.css",
        "../_static/js/index.be7d3bbb2ef33a8344ce.js",
        "https://github.com/neurodata/hyppo/edit/main/docs/changelog/v0.2.1.md",
        "/api/",
        "#maintenance",
        "../_static/js/copybutton.js",
        "../_static/language_data.js",
        "https://arxiv.org/abs/1907.02088",
        "https://github.com/neurodata/hyppo",
        "/",
        "../search.html",
        "/changelog/v0.1.3",
        "/changelog/v0.3.2",
        "../_static/css/blank.css",
        "../_static/underscore.js",
        "../_static/vendor/fontawesome/5.13.0/css/all.min.css",
        "#",
        "v0.2.0.html",
        "#hyppo-v0-2-1",
        "#documentation",
        "../genindex.html",
        "/changelog/v0.2.2",
        "../_static/vendor/fontawesome/5.13.0/webfonts/fa-solid-900.woff2",
        "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=TeX-AMS-MML_HTMLorMML",
        "#bug-fixes",
        "/changelog/v0.1.0"
      ],
      "httpBodyMetaTags": {},
      "httpBodyByteSize": 12534,
      "httpBodyPageTitle": "hyppo v0.2.1 — hyppo alpha documentation"
    },
    "/reference/algs": {
      "date": "2026-02-14T07:46:28Z",
      "httpProtocol": "http/1.1",
      "httpStatus": 200,
      "ipAddress": "98.84.224.111",
      "ipASN": "Amazon.com, Inc.",
      "ipCountry": "United States",
      "httpHeaderHash": "NCQNX7EEQF2PBII7WX54KRQBLBKUAJTN",
      "httpHeaderTechnologies": [
        "Netlify"
      ],
      "httpHeaderUrls": [],
      "httpHeaderByteSize": 476,
      "httpBodyHash": "MYBSF6VLIE2E6XDTXQKULH7H3REDUFTN",
      "httpBodyTechnologies": [
        "cdnjs",
        "jQuery",
        "Pygments",
        "RequireJS",
        "Cloudflare",
        "Underscore.js"
      ],
      "httpBodyUrls": [
        "/reference/",
        "/readme#environment",
        "/tutorial#connecting-fragments",
        "#brainlit.algorithms.detect_somas.find_somas",
        "/notebooks/preprocessing/connectedcomponents",
        "/reference/brainline#apply-ilastik-and-validate-models",
        "#brainlit.algorithms.generate_fragments.state_generation.resolution",
        "/_modules/brainlit/algorithms/trace_analysis/fit_spline#GeometricGraph",
        "#",
        "/reference/brainline",
        "../_static/css/theme.css",
        "/viterbrain#how-to-use-viterbrain",
        "../_sources/reference/algs.rst.txt",
        "#brainlit.algorithms.trace_analysis.GeometricGraph.removed_duplicates",
        "/_modules/brainlit/algorithms/trace_analysis/fit_spline#CubicHermiteChain",
        "/_modules/brainlit/algorithms/trace_analysis/fit_spline#compute_parameterization",
        "/readme#visualize",
        "/reference/viz",
        "/readme#credits",
        "/reference/viz#trace-visualization",
        "/reference/feature_extraction#brainlit.feature_extraction.NeighborhoodFeatures",
        "/_modules/brainlit/algorithms/connect_fragments/viterbrain#ViterBrain.compute_all_costs_dist",
        "/readme#contributing",
        "/tutorial#soma-detection",
        "/notebooks/utils/uploading_benchmarking",
        "/reference/brainline#data-helper-functions",
        "/napari_plugin#how-to-use-the-viterbrain-napari-plugin",
        "#brainlit.algorithms.trace_analysis.CubicHermiteChain.axis",
        "/brainline#brainline-whole-brain-fluorescence-volume-analysis-pipeline",
        "/_modules/brainlit/algorithms/connect_fragments/viterbrain#ViterBrain.compute_all_costs_int",
        "#trace-analysis",
        "../_static/jquery.js",
        "/readme#installation",
        "/reference/map_neurons",
        "/readme#how-to-use-brainlit",
        "/tutorial#adaptive-thresholding",
        "/reference/preprocessing#segmentation-processing",
        "#brainlit.algorithms.generate_fragments.state_generation.parallel",
        "/license",
        "../genindex.html",
        "/tutorial#preprocessing",
        "https://github.com/rtfd/sphinx_rtd_theme",
        "#brainlit.algorithms.generate_fragments.state_generation.tiered_path",
        "#brainlit.algorithms.generate_fragments.state_generation.ilastik_program_path",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_edge_weights",
        "#brainlit.algorithms.generate_fragments.state_generation.ilastik_project_path",
        "/readme",
        "#fragment-generation",
        "/map_neurons#neuron-mapping",
        "/tutorial#algorithms",
        "/readme#install-from-pypi",
        "/tutorial#semi-automatic-annotation-pipeline",
        "/_modules/brainlit/algorithms/detect_somas/detect#find_somas",
        "https://www.math.ucdavis.edu/~kouba/Math21BHWDIRECTORY/ArcLength.pdf",
        "#brainlit.algorithms.connect_fragments.ViterBrain.compute_all_costs_int",
        "#brainlit.algorithms.generate_fragments.state_generation.new_layers_dir",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_soma_lbls",
        "/readme#registration",
        "/tutorial#segmentation",
        "http://sphinx-doc.org/",
        "/reference/utils#data-helper-methods",
        "https://github.com/neurodata/brainlit/issues",
        "#brainlit.algorithms.trace_analysis.CubicHermiteChain",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_bfs",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation",
        "/map_neurons#poster",
        "/viterbrain#relevant-directory",
        "https://docs.python.org/3/library/pathlib.html#pathlib.Path",
        "#brainlit.algorithms.connect_fragments.ViterBrain.frag_soma_dist",
        "#brainlit.algorithms.generate_fragments.state_generation.prob_path",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_edge_weights",
        "/brainline#publication",
        "/reference/preprocessing",
        "#brainlit.algorithms.generate_fragments.state_generation.states_path",
        "/tutorial#trace-analysis",
        "/notebooks/utils/downloading_benchmarking",
        "#brainlit.algorithms.generate_fragments.state_generation.predict",
        "#brainlit.algorithms.trace_analysis.GeometricGraph.fit_spline_tree_invariant",
        "/reference/utils#s3-helper-methods",
        "/brainline",
        "/viterbrain",
        "/napari_plugin",
        "../_static/js/theme.js",
        "../_static/graphviz.css",
        "/reference/preprocessing#image-filters",
        "/_modules/brainlit/algorithms/trace_analysis/spline_fxns#speed",
        "#brainlit.algorithms.generate_fragments.state_generation.soma_coords",
        "index.html",
        "../search.html",
        "map_neurons.html",
        "https://docs.python.org/3/library/functions.html#int",
        "#brainlit.algorithms.connect_fragments.ViterBrain.shortest_path",
        "/_modules/brainlit/algorithms/trace_analysis/spline_fxns#torsion",
        "/_modules/brainlit/algorithms/trace_analysis/spline_fxns#curvature",
        "/_modules/brainlit/algorithms/connect_fragments/viterbrain#ViterBrain",
        "/reference/utils",
        "/reference/preprocessing#image-processing",
        "#brainlit.algorithms.connect_fragments.ViterBrain.compute_all_costs_dist",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_image_tiered",
        "/_modules/brainlit/algorithms/connect_fragments/viterbrain#ViterBrain.shortest_path",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.predict",
        "/readme#tests",
        "../_static/doctools.js",
        "#brainlit.algorithms.connect_fragments.ViterBrain",
        "#brainlit.algorithms.generate_fragments.state_generation.fg_channel",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_frags",
        "/map_neurons#nyquist-sampling-rate-for-projection-neuron-reconstruction",
        "https://docs.python.org/3/library/stdtypes.html#str",
        "../_static/underscore.js",
        "/tutorial",
        "/readme#features",
        "/splines#relevant-directory",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_frags",
        "/_modules/brainlit/algorithms/trace_analysis/fit_spline#GeometricGraph.fit_spline_tree_invariant",
        "#algorithms",
        "/tutorial#pipelines",
        "/readme#create-a-session",
        "/reference/brainline#results-analysis",
        "https://docs.python.org/3/library/stdtypes.html#list",
        "https://docs.python.org/3/library/functions.html#float",
        "#brainlit.algorithms.generate_fragments.state_generation.fragment_path",
        "https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.zoom.html",
        "/readme#motivation",
        "/reference/feature_extraction",
        "#brainlit.algorithms.generate_fragments.state_generation.compute_states",
        "https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_states",
        "/readme#data-setup",
        "/map_neurons",
        "https://readthedocs.org",
        "/notebooks/utils/uploading_brains",
        "/notebooks/preprocessing/gaborfilter",
        "http://www.github.com/neurodata/brainlit/",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_soma_lbls",
        "../_static/pygments.css",
        "/readme#push-and-pull-data",
        "/readme#install-from-source",
        "/notebooks/visualization/loading",
        "../_static/documentation_options.js",
        "#brainlit.algorithms.trace_analysis.speed",
        "/napari_plugin#viterbrain-napari-plugin-installation",
        "/readme#automatically-and-semi-automatically-segment",
        "/",
        "#soma-detection",
        "/notebooks/visualization/neighborhood_visualization_demo",
        "#brainlit.algorithms.trace_analysis.compute_parameterization",
        "#brainlit.algorithms.trace_analysis.GeometricGraph.spline_tree",
        "/_modules/brainlit/algorithms/connect_fragments/viterbrain#ViterBrain.frag_soma_dist",
        "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=TeX-AMS-MML_HTMLorMML",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_bfs",
        "/_modules/brainlit/algorithms/generate_fragments/state_generation#state_generation.compute_image_tiered",
        "/tutorial#vizualization",
        "/viterbrain#manuscript",
        "/map_neurons#manuscript",
        "/reference/map_neurons#fragment-generation",
        "#brainlit.algorithms.trace_analysis.GeometricGraph",
        "http://www.sci.brooklyn.cuny.edu/~mate/misc/frenet_serret.pdf",
        "/readme#core",
        "#brainlit.algorithms.generate_fragments.state_generation.image_chunks",
        "#connect-fragments",
        "../_static/language_data.js",
        "https://docs.python.org/3/library/exceptions.html#KeyError",
        "/notebooks/utils/downloading_benchmarking#Download-raw-benchmarking-data",
        "/splines",
        "/map_neurons#relevant-directory",
        "/readme#common-installation-issues",
        "#brainlit.algorithms.trace_analysis.curvature",
        "#brainlit.algorithms.trace_analysis.GeometricGraph.root",
        "#brainlit.algorithms.generate_fragments.state_generation",
        "#brainlit.algorithms.trace_analysis.GeometricGraph.spline_type",
        "#brainlit.algorithms.generate_fragments.state_generation.image_shape",
        "https://docs.python.org/3/library/functions.html#bool",
        "/splines#publication",
        "/readme#manually-segment",
        "/notebooks/utils/downloading_brains",
        "https://docs.python.org/3/library/exceptions.html#ValueError",
        "/tutorial#brainline-whole-brain-fluorescence-volume-analysis-pipeline",
        "https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js",
        "/tutorial#utils",
        "/splines#how-to-reproduce-this-experiment",
        "#brainlit.algorithms.trace_analysis.torsion",
        "#brainlit.algorithms.generate_fragments.state_generation.image_path",
        "https://scikit-image.org/docs/dev/api/skimage.filters.html#skimage.filters.threshold_otsu"
      ],
      "httpBodyMetaTags": {},
      "httpBodyByteSize": 83255,
      "httpBodyPageTitle": "Algorithms — brainlit 0.0.0 documentation"
    }
  }
}